species:   Clros
pid:       PID2224
parent:    cro-mir-18
paralog:   
locus:     CADEHS020000003.2:1621040-1621076
matures:   ['UCUUCCGUAGUAUAGUG', 'CUCUUGCUGGGUUAGGAA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000003.2:1621040-1621076

23119 out of bounds
1799 alignments
1797 proper strand
1786 stranded perfect matches

****************** ******************
ACUCUUGCUGGGUUAGGAAUUCUUCCGUAGUAUAGUG
(((..(((((.(..((.....))..).))))).))).
--------------------UCUUCCGUAGUAUAGUG l=17 a=184 c
-CUCUUGCUGGGUUAGGAA------------------ l=18 a=0 c*
---------------------CUUCCGUAGUAUAGUG l=16 a=1237 ma
-CUCUUGCUGGGUUAGGA------------------- l=17 a=0 ma*

-------------------------CGUAGUAUAGUG l=12 a=1 
------------------------CCGUAGUAUAG-- l=11 a=3 
------------------------CCGUAGUAUAGU- l=12 a=1 
------------------------CCGUAGUAUAGUG l=13 a=50 
-----------------------UCCGUAGUAUAG-- l=12 a=1 
-----------------------UCCGUAGUAUAGU- l=13 a=1 
-----------------------UCCGUAGUAUAGUG l=14 a=28 
-----------------------cCCGUAGUAUAGUG l=14 a=1 
----------------------UUCCGUAGUAUA--- l=12 a=4 
----------------------UUCCGUAGUAUAG-- l=13 a=5 
----------------------UUCCGUAGUAUAGUu l=15 a=1 
----------------------UUCCGUAGUAUAGUG l=15 a=6 
---------------------CUUCCGUAGUAUAG-- l=14 a=125 
---------------------CUUCCGUAGUAUAGU- l=15 a=9 
---------------------CUUCCGUAGUAUAGUG l=16 a=1237 (ma)
---------------------CUUCCGUAGUAUAGaG l=16 a=1 
---------------------CUUCCGUAGUAUAGgG l=16 a=1 
---------------------CUUCCGUAGUAUAGUu l=16 a=1 
---------------------CUUCCGUAGcAUAGUG l=16 a=1 
--------------------UCUUCCGUAGU------ l=11 a=5 
--------------------UCUUCCGUAGUA----- l=12 a=2 
--------------------UCUUCCGUAGUAU---- l=13 a=2 
--------------------UCUUCCGUAGUAUA--- l=14 a=13 
--------------------UCUUCCGUAGUAUAG-- l=15 a=70 
--------------------UCUUCCGUAGUAUAGU- l=16 a=5 
--------------------UCUUCCGUAGUAUAGg- l=16 a=1 
--------------------UCUUCCGUAGUAUAGUG l=17 a=184 (c)
--------------------UCUUCCGUAGUAcAGUG l=17 a=1 
--------UGGGUUAGGAAU----------------- l=12 a=1 
------GCUGGGUUAGGA------------------- l=12 a=1 
------GCUGGGUUAGGAAUa---------------- l=15 a=1 
-----UGCUGGGUUAGG-------------------- l=12 a=1 
-----UGCUGGGUUAGGA------------------- l=13 a=3 
---CUUGCUGGGUUAG--------------------- l=13 a=3 
---CUUGCUGGGUUAGG-------------------- l=14 a=1 
--UCUUGCUGGGUU----------------------- l=12 a=1 
--UCUUGCUGGGUUAGGAAUa---------------- l=19 a=1 
ACUCUUGCUGGG------------------------- l=12 a=4 
ACUCUUGCUGGGUUA---------------------- l=15 a=1 
ACUCUUGCUGGGUUAG--------------------- l=16 a=1 
ACUCUUGCUGGGUUAGG-------------------- l=17 a=8 
ACUCUUGCUGGGUUAGGA------------------- l=18 a=2 
ACUCUUGCUGGGUUAGGAAU----------------- l=20 a=7 
ACUCUUGCUGGGUUAGGAAUUCUUCCa---------- l=27 a=1 

mb-01110
ax-1001101
ku-11
ss-101011101110
fn-111
